J5_7O81_002

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUG(PSU)*AAAUAAC*GGAAUGAG*CGAGG(A2M)UCCAU*AUA(OMG)

Length

35 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|A2|C|30
7O81|1|A2|U|31
7O81|1|A2|U|32
7O81|1|A2|G|33
7O81|1|A2|PSU|34
*
7O81|1|A2|A|522
7O81|1|A2|A|523
7O81|1|A2|A|524
7O81|1|A2|U|525
7O81|1|A2|A|526
7O81|1|A2|A|527
7O81|1|A2|C|528
*
7O81|1|A2|G|559
7O81|1|A2|G|560
7O81|1|A2|A|561
7O81|1|A2|A|562
7O81|1|A2|U|563
7O81|1|A2|G|564
7O81|1|A2|A|565
7O81|1|A2|G|566
*
7O81|1|A2|C|586
7O81|1|A2|G|587
7O81|1|A2|A|588
7O81|1|A2|G|589
7O81|1|A2|G|590
7O81|1|A2|A2M|591
7O81|1|A2|U|592
7O81|1|A2|C|593
7O81|1|A2|C|594
7O81|1|A2|A|595
7O81|1|A2|U|596
*
7O81|1|A2|A|642
7O81|1|A2|U|643
7O81|1|A2|A|644
7O81|1|A2|OMG|645

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain AU

EDF1

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Aw

40S ribosomal protein S23