J5_7O81_004

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

7O81|1|A2|G|126, 7O81|1|A2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|A2|G|123
7O81|1|A2|U|124
7O81|1|A2|C|125
7O81|1|A2|G|126
7O81|1|A2|C|127
7O81|1|A2|U|128
7O81|1|A2|C|129
*
7O81|1|A2|G|183
7O81|1|A2|G|184
7O81|1|A2|G|185
*
7O81|1|A2|U|214
7O81|1|A2|G|215
*
7O81|1|A2|C|311
7O81|1|A2|C|312
7O81|1|A2|G|313
*
7O81|1|A2|C|338
7O81|1|A2|G|339
7O81|1|A2|A|340
7O81|1|A2|C|341
7O81|1|A2|C|342

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

Ribosomal protein eS4

Chain Af

40S ribosomal protein S6

Chain Ah

40S ribosomal protein S8