J5_7O9K_005
3D structure
- PDB id
- 7O9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAAGAC*GAUAACAGC*GACCUCGAUG*UUCAG*CGGUUU
- Length
- 37 nucleotides
- Bulged bases
- 7O9K|1|A|A|2723, 7O9K|1|A|U|2936, 7O9K|1|A|C|2986, 7O9K|1|A|U|3096, 7O9K|1|A|U|3097
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O9K|1|A|A|2720
7O9K|1|A|G|2721
7O9K|1|A|A|2722
7O9K|1|A|A|2723
7O9K|1|A|G|2724
7O9K|1|A|A|2725
7O9K|1|A|C|2726
*
7O9K|1|A|G|2934
7O9K|1|A|A|2935
7O9K|1|A|U|2936
7O9K|1|A|A|2937
7O9K|1|A|A|2938
7O9K|1|A|C|2939
7O9K|1|A|A|2940
7O9K|1|A|G|2941
7O9K|1|A|C|2942
*
7O9K|1|A|G|2983
7O9K|1|A|A|2984
7O9K|1|A|C|2985
7O9K|1|A|C|2986
7O9K|1|A|U|2987
7O9K|1|A|C|2988
7O9K|1|A|G|2989
7O9K|1|A|A|2990
7O9K|1|A|U|2991
7O9K|1|A|G|2992
*
7O9K|1|A|U|3071
7O9K|1|A|U|3072
7O9K|1|A|C|3073
7O9K|1|A|A|3074
7O9K|1|A|G|3075
*
7O9K|1|A|C|3093
7O9K|1|A|G|3094
7O9K|1|A|G|3095
7O9K|1|A|U|3096
7O9K|1|A|U|3097
7O9K|1|A|U|3098
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain 0
- 39S ribosomal protein L32, mitochondrial
- Chain A1
- 5-methylcytosine rRNA methyltransferase NSUN4
- Chain E
- 39S ribosomal protein L3, mitochondrial
- Chain F
- 39S ribosomal protein L4, mitochondrial
- Chain G
- Mitochondrial ribosome-associated GTPase 2
- Chain N
- 39S ribosomal protein L16, mitochondrial
- Chain T
- 39S ribosomal protein L22, mitochondrial
- Chain d
- 39S ribosomal protein L45, mitochondrial
- Chain n
- rRNA methyltransferase 2, mitochondrial
- Chain o
- Ribosomal protein 63, mitochondrial
Coloring options: