J5_7ODE_001

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7ODE|1|I|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7ODE_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0619

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7ODE|1|I|C|47
7ODE|1|I|G|48
7ODE|1|I|A|49
7ODE|1|I|U|50
7ODE|1|I|G|51
7ODE|1|I|A|52
7ODE|1|I|A|53
7ODE|1|I|G|54
*
7ODE|1|I|C|116
7ODE|1|I|G|117
7ODE|1|I|A|118
7ODE|1|I|A|119
7ODE|1|I|U|120
7ODE|1|I|G|121
*
7ODE|1|I|C|130
7ODE|1|I|A|131
*
7ODE|1|I|U|148
7ODE|1|I|A|149
7ODE|1|I|U|150
*
7ODE|1|I|A|176
7ODE|1|I|G|177
7ODE|1|I|G|178

Current chains

Chain I

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L34