J5_7ODE_003

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7ODE_003 not in the Motif Atlas

Homologous match to J5_7A0S_004

Geometric discrepancy: 0.5012

The information below is about J5_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.6

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

7ODE|1|I|C|584
7ODE|1|I|G|585
7ODE|1|I|A|586
7ODE|1|I|C|587
7ODE|1|I|U|588
7ODE|1|I|U|589
*
7ODE|1|I|A|668
7ODE|1|I|G|669
7ODE|1|I|A|670
7ODE|1|I|C|671
*
7ODE|1|I|G|809
7ODE|1|I|U|810
7ODE|1|I|U|811
7ODE|1|I|C|812
*
7ODE|1|I|G|1195
7ODE|1|I|C|1196
*
7ODE|1|I|G|1250
7ODE|1|I|C|1251
7ODE|1|I|G|1252
7ODE|1|I|A|1253
7ODE|1|I|A|1254
7ODE|1|I|U|1255
7ODE|1|I|G|1256

Current chains

Chain I

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain Y

50S ribosomal protein L20

Chain Z

50S ribosomal protein L21