J5_7ODT_002
3D structure
- PDB id
- 7ODT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C of the human mitoribosomal large subunit assembly intermediate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAGAAAUAAC*GACCC*GUUG*CCAAU*AAGAACUAAUG
- Length
- 36 nucleotides
- Bulged bases
- 7ODT|1|A|A|1869, 7ODT|1|A|G|2292, 7ODT|1|A|U|2299
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ODT|1|A|C|1865
7ODT|1|A|U|1866
7ODT|1|A|A|1867
7ODT|1|A|G|1868
7ODT|1|A|A|1869
7ODT|1|A|A|1870
7ODT|1|A|A|1871
7ODT|1|A|U|1872
7ODT|1|A|A|1873
7ODT|1|A|A|1874
7ODT|1|A|C|1875
*
7ODT|1|A|G|1899
7ODT|1|A|A|1900
7ODT|1|A|C|1901
7ODT|1|A|C|1902
7ODT|1|A|C|1903
*
7ODT|1|A|G|2019
7ODT|1|A|U|2020
7ODT|1|A|U|2021
7ODT|1|A|G|2022
*
7ODT|1|A|C|2271
7ODT|1|A|C|2272
7ODT|1|A|A|2273
7ODT|1|A|A|2274
7ODT|1|A|U|2275
*
7ODT|1|A|A|2290
7ODT|1|A|A|2291
7ODT|1|A|G|2292
7ODT|1|A|A|2293
7ODT|1|A|A|2294
7ODT|1|A|C|2295
7ODT|1|A|U|2296
7ODT|1|A|A|2297
7ODT|1|A|A|2298
7ODT|1|A|U|2299
7ODT|1|A|G|2300
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 3
- 39S ribosomal protein L35, mitochondrial
- Chain F
- 39S ribosomal protein L4, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain R
- 39S ribosomal protein L20, mitochondrial
- Chain S
- 39S ribosomal protein L21, mitochondrial
- Chain b
- 39S ribosomal protein L43, mitochondrial
- Chain c
- 39S ribosomal protein L44, mitochondrial
- Chain g
- 39S ribosomal protein L49, mitochondrial
- Chain i
- 39S ribosomal protein L51, mitochondrial
Coloring options: