J5_7OF5_003
3D structure
- PDB id
- 7OF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAAGACC*GGAUAACAG*CCUCGAUG*UUCAG*CGGUUU
- Length
- 36 nucleotides
- Bulged bases
- 7OF5|1|A|A|2935, 7OF5|1|A|U|2991, 7OF5|1|A|U|3096, 7OF5|1|A|U|3097
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OF5|1|A|A|2720
7OF5|1|A|G|2721
7OF5|1|A|A|2722
7OF5|1|A|A|2723
7OF5|1|A|G|2724
7OF5|1|A|A|2725
7OF5|1|A|C|2726
7OF5|1|A|C|2727
*
7OF5|1|A|G|2933
7OF5|1|A|G|2934
7OF5|1|A|A|2935
7OF5|1|A|U|2936
7OF5|1|A|A|2937
7OF5|1|A|A|2938
7OF5|1|A|C|2939
7OF5|1|A|A|2940
7OF5|1|A|G|2941
*
7OF5|1|A|C|2985
7OF5|1|A|C|2986
7OF5|1|A|U|2987
7OF5|1|A|C|2988
7OF5|1|A|G|2989
7OF5|1|A|A|2990
7OF5|1|A|U|2991
7OF5|1|A|G|2992
*
7OF5|1|A|U|3071
7OF5|1|A|U|3072
7OF5|1|A|C|3073
7OF5|1|A|A|3074
7OF5|1|A|G|3075
*
7OF5|1|A|C|3093
7OF5|1|A|G|3094
7OF5|1|A|G|3095
7OF5|1|A|U|3096
7OF5|1|A|U|3097
7OF5|1|A|U|3098
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 0
- 39S ribosomal protein L32, mitochondrial
- Chain C
- 5-methylcytosine rRNA methyltransferase NSUN4
- Chain E
- 39S ribosomal protein L3, mitochondrial
- Chain F
- 39S ribosomal protein L4, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain N
- 39S ribosomal protein L16, mitochondrial
- Chain T
- 39S ribosomal protein L22, mitochondrial
- Chain d
- 39S ribosomal protein L45, mitochondrial
- Chain x
- Mitochondrial ribosome-associated GTPase 2
Coloring options: