J5_7OH3_005
3D structure
- PDB id
- 7OH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCACAUC*GAUGUCCUAAG*UUGAU*AC*GGC
- Length
- 28 nucleotides
- Bulged bases
- 7OH3|1|1|C|2653, 7OH3|1|1|C|2654, 7OH3|1|1|U|2655, 7OH3|1|1|U|2713, 7OH3|1|1|G|2714, 7OH3|1|1|A|2715
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OH3|1|1|G|2624
7OH3|1|1|C|2625
7OH3|1|1|A|2626
7OH3|1|1|C|2627
7OH3|1|1|A|2628
7OH3|1|1|U|2629
7OH3|1|1|C|2630
*
7OH3|1|1|G|2648
7OH3|1|1|A|2649
7OH3|1|1|U|2650
7OH3|1|1|G|2651
7OH3|1|1|U|2652
7OH3|1|1|C|2653
7OH3|1|1|C|2654
7OH3|1|1|U|2655
7OH3|1|1|A|2656
7OH3|1|1|A|2657
7OH3|1|1|G|2658
*
7OH3|1|1|U|2712
7OH3|1|1|U|2713
7OH3|1|1|G|2714
7OH3|1|1|A|2715
7OH3|1|1|U|2716
*
7OH3|1|1|A|2740
7OH3|1|1|C|2741
*
7OH3|1|1|G|2753
7OH3|1|1|G|2754
7OH3|1|1|C|2755
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 5
- rRNA-processing protein CGR1
- Chain J
- 60S ribosomal protein L11-A
- Chain T
- 60S ribosomal protein L21-A
- Chain m
- Nucleolar GTP-binding protein 2
- Chain r
- Ribosome biogenesis protein NSA2
- Chain v
- Ribosome biogenesis protein RPF2
- Chain w
- Regulator of ribosome biosynthesis
- Chain x
- Ribosome assembly protein 4
Coloring options: