J5_7OHQ_001
3D structure
- PDB id
- 7OHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 7OHQ|1|2|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7OHQ_001 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.1289
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OHQ|1|1|A|20
7OHQ|1|1|G|21
7OHQ|1|1|G|22
*
7OHQ|1|2|C|35
7OHQ|1|2|G|36
7OHQ|1|2|A|37
7OHQ|1|2|U|38
7OHQ|1|2|G|39
7OHQ|1|2|A|40
7OHQ|1|2|A|41
7OHQ|1|2|G|42
*
7OHQ|1|2|U|102
7OHQ|1|2|G|103
7OHQ|1|2|A|104
7OHQ|1|2|A|105
7OHQ|1|2|C|106
7OHQ|1|2|G|107
*
7OHQ|1|2|C|115
7OHQ|1|2|G|116
*
7OHQ|1|2|C|137
7OHQ|1|2|A|138
7OHQ|1|2|U|139
Current chains
- Chain 1
- 25S rRNA
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain N
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
- Chain n
- Pescadillo homolog
Coloring options: