J5_7OHQ_006
3D structure
- PDB id
- 7OHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AAGAAGAC*GAUAACUGGCUUGUG*UUUUUGAUUCUUCGAUGUC*GGGUUUAG*UAGUUUU
- Length
- 57 nucleotides
- Bulged bases
- 7OHQ|1|1|U|2818, 7OHQ|1|1|G|2824, 7OHQ|1|1|G|2828, 7OHQ|1|1|U|2829, 7OHQ|1|1|U|2859, 7OHQ|1|1|G|2863, 7OHQ|1|1|C|2867, 7OHQ|1|1|U|2869, 7OHQ|1|1|G|2871, 7OHQ|1|1|A|2872, 7OHQ|1|1|U|2978, 7OHQ|1|1|U|2979, 7OHQ|1|1|U|2980
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OHQ|1|1|A|2398
7OHQ|1|1|A|2399
7OHQ|1|1|G|2400
7OHQ|1|1|A|2401
7OHQ|1|1|A|2402
7OHQ|1|1|G|2403
7OHQ|1|1|A|2404
7OHQ|1|1|C|2405
*
7OHQ|1|1|G|2816
7OHQ|1|1|A|2817
7OHQ|1|1|U|2818
7OHQ|1|1|A|2819
7OHQ|1|1|A|2820
7OHQ|1|1|C|2821
7OHQ|1|1|U|2822
7OHQ|1|1|G|2823
7OHQ|1|1|G|2824
7OHQ|1|1|C|2825
7OHQ|1|1|U|2826
7OHQ|1|1|U|2827
7OHQ|1|1|G|2828
7OHQ|1|1|U|2829
7OHQ|1|1|G|2830
*
7OHQ|1|1|U|2858
7OHQ|1|1|U|2859
7OHQ|1|1|U|2860
7OHQ|1|1|U|2861
7OHQ|1|1|U|2862
7OHQ|1|1|G|2863
7OHQ|1|1|A|2864
7OHQ|1|1|U|2865
7OHQ|1|1|U|2866
7OHQ|1|1|C|2867
7OHQ|1|1|U|2868
7OHQ|1|1|U|2869
7OHQ|1|1|C|2870
7OHQ|1|1|G|2871
7OHQ|1|1|A|2872
7OHQ|1|1|U|2873
7OHQ|1|1|G|2874
7OHQ|1|1|U|2875
7OHQ|1|1|C|2876
*
7OHQ|1|1|G|2950
7OHQ|1|1|G|2951
7OHQ|1|1|G|2952
7OHQ|1|1|U|2953
7OHQ|1|1|U|2954
7OHQ|1|1|U|2955
7OHQ|1|1|A|2956
7OHQ|1|1|G|2957
*
7OHQ|1|1|U|2975
7OHQ|1|1|A|2976
7OHQ|1|1|G|2977
7OHQ|1|1|U|2978
7OHQ|1|1|U|2979
7OHQ|1|1|U|2980
7OHQ|1|1|U|2981
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain B
- 60S ribosomal protein L3
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain m
- Nucleolar GTP-binding protein 2
- Chain r
- Ribosome biogenesis protein NSA2
- Chain s
- Nuclear GTP-binding protein NUG1
- Chain x
- Ribosome assembly protein 4
Coloring options: