Loop J5_7OID

3D structure

PDB id: 7OID (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å

Loop

Sequence: AGAAGACC*GGAUAACA*UCGAUGUU*AGUUCAG*CGGUUU
Length: 37 nucleotides
Bulged bases: 7OID|1|A|A|1055, 7OID|1|A|A|1265, 7OID|1|A|U|1266, 7OID|1|A|G|1322, 7OID|1|A|U|1323, 7OID|1|A|U|1402, 7OID|1|A|U|1426, 7OID|1|A|U|1427
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7OID|1|A|A|1050
7OID|1|A|G|1051
7OID|1|A|A|1052
7OID|1|A|A|1053
7OID|1|A|G|1054
7OID|1|A|A|1055
7OID|1|A|C|1056
7OID|1|A|C|1057
*
7OID|1|A|G|1263
7OID|1|A|G|1264
7OID|1|A|A|1265
7OID|1|A|U|1266
7OID|1|A|A|1267
7OID|1|A|A|1268
7OID|1|A|C|1269
7OID|1|A|A|1270
*
7OID|1|A|U|1317
7OID|1|A|C|1318
7OID|1|A|G|1319
7OID|1|A|A|1320
7OID|1|A|U|1321
7OID|1|A|G|1322
7OID|1|A|U|1323
7OID|1|A|U|1324
*
7OID|1|A|A|1399
7OID|1|A|G|1400
7OID|1|A|U|1401
7OID|1|A|U|1402
7OID|1|A|C|1403
7OID|1|A|A|1404
7OID|1|A|G|1405
*
7OID|1|A|C|1423
7OID|1|A|G|1424
7OID|1|A|G|1425
7OID|1|A|U|1426
7OID|1|A|U|1427
7OID|1|A|U|1428

Current chains

Chain A: 16S rRNA

Nearby chains

Chain 0: 39S ribosomal protein L32, mitochondrial
Chain E: 39S ribosomal protein L3, mitochondrial
Chain F: 39S ribosomal protein L4, mitochondrial
Chain M: 39S ribosomal protein L15, mitochondrial
Chain N: 39S ribosomal protein L16, mitochondrial

J5_7OID_003