Loop J5_7OIE

3D structure

PDB id: 7OIE (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5B
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

Loop

Sequence: AGAAGACC*GGAUAACA*UCGAUGUUG*UGAGUUCAG*CGGUUU
Length: 40 nucleotides
Bulged bases: 7OIE|1|A|A|1055, 7OIE|1|A|A|1265, 7OIE|1|A|U|1266, 7OIE|1|A|G|1322, 7OIE|1|A|U|1323, 7OIE|1|A|U|1426
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7OIE|1|A|A|1050
7OIE|1|A|G|1051
7OIE|1|A|A|1052
7OIE|1|A|A|1053
7OIE|1|A|G|1054
7OIE|1|A|A|1055
7OIE|1|A|C|1056
7OIE|1|A|C|1057
*
7OIE|1|A|G|1263
7OIE|1|A|G|1264
7OIE|1|A|A|1265
7OIE|1|A|U|1266
7OIE|1|A|A|1267
7OIE|1|A|A|1268
7OIE|1|A|C|1269
7OIE|1|A|A|1270
*
7OIE|1|A|U|1317
7OIE|1|A|C|1318
7OIE|1|A|G|1319
7OIE|1|A|A|1320
7OIE|1|A|U|1321
7OIE|1|A|G|1322
7OIE|1|A|U|1323
7OIE|1|A|U|1324
7OIE|1|A|G|1325
*
7OIE|1|A|U|1397
7OIE|1|A|G|1398
7OIE|1|A|A|1399
7OIE|1|A|G|1400
7OIE|1|A|U|1401
7OIE|1|A|U|1402
7OIE|1|A|C|1403
7OIE|1|A|A|1404
7OIE|1|A|G|1405
*
7OIE|1|A|C|1423
7OIE|1|A|G|1424
7OIE|1|A|G|1425
7OIE|1|A|U|1426
7OIE|1|A|U|1427
7OIE|1|A|U|1428

Current chains

Chain A: 16S rRNA

Nearby chains

Chain 0: 39S ribosomal protein L32, mitochondrial
Chain E: 39S ribosomal protein L3, mitochondrial
Chain F: 39S ribosomal protein L4, mitochondrial
Chain M: 39S ribosomal protein L15, mitochondrial
Chain N: 39S ribosomal protein L16, mitochondrial

J5_7OIE_003