J5_7OIF_008

3D structure

PDB id

7OIF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7OIF_008 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0609

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7OIF|1|2|C|36
7OIF|1|2|U|37
7OIF|1|2|G|38
7OIF|1|2|G|39
*
7OIF|1|2|C|403
7OIF|1|2|G|404
7OIF|1|2|U|405
7OIF|1|2|G|406
*
7OIF|1|2|C|436
7OIF|1|2|U|437
7OIF|1|2|U|438
7OIF|1|2|U|439
7OIF|1|2|C|440
7OIF|1|2|A|441
7OIF|1|2|G|442
*
7OIF|1|2|C|492
7OIF|1|2|A|493
7OIF|1|2|G|494
7OIF|1|2|A|495
7OIF|1|2|A|496
7OIF|1|2|G|497
7OIF|1|2|A|498
7OIF|1|2|A|499
7OIF|1|2|G|500
*
7OIF|1|2|C|545
7OIF|1|2|A|546
7OIF|1|2|A|547
7OIF|1|2|G|548

Current chains

Chain 2

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S4

Chain p

30S ribosomal protein S12