J5_7OIG_007

3D structure

PDB id

7OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7OIG_007 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.0631

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7OIG|1|2|C|36
7OIG|1|2|U|37
7OIG|1|2|G|38
7OIG|1|2|G|39
*
7OIG|1|2|C|403
7OIG|1|2|G|404
7OIG|1|2|U|405
7OIG|1|2|G|406
*
7OIG|1|2|C|436
7OIG|1|2|U|437
7OIG|1|2|U|438
7OIG|1|2|U|439
7OIG|1|2|C|440
*
7OIG|1|2|G|497
7OIG|1|2|A|498
7OIG|1|2|A|499
7OIG|1|2|G|500
*
7OIG|1|2|C|545
7OIG|1|2|A|546
7OIG|1|2|A|547
7OIG|1|2|G|548

Current chains

Chain 2

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S4

Chain p

30S ribosomal protein S12