3D structure

PDB id
7OII (explore in PDB, NAKB, or RNA 3D Hub)
Description
CspA-70 cotranslational folding intermediate 2
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CGAUGAAG*CGAAUG*CA*UAU*AGG
Length
22 nucleotides
Bulged bases
7OII|1|1|U|50
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7OII_001 not in the Motif Atlas
Homologous match to J5_5J7L_013
Geometric discrepancy: 0.0543
The information below is about J5_5J7L_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

7OII|1|1|C|47
7OII|1|1|G|48
7OII|1|1|A|49
7OII|1|1|U|50
7OII|1|1|G|51
7OII|1|1|A|52
7OII|1|1|A|53
7OII|1|1|G|54
*
7OII|1|1|C|116
7OII|1|1|G|117
7OII|1|1|A|118
7OII|1|1|A|119
7OII|1|1|U|120
7OII|1|1|G|121
*
7OII|1|1|C|130
7OII|1|1|A|131
*
7OII|1|1|U|148
7OII|1|1|A|149
7OII|1|1|U|150
*
7OII|1|1|A|176
7OII|1|1|G|177
7OII|1|1|G|178

Current chains

Chain 1
23S rRNA

Nearby chains

Chain c
50S ribosomal protein L34

Coloring options:


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