3D structure

PDB id
7OII (explore in PDB, NAKB, or RNA 3D Hub)
Description
CspA-70 cotranslational folding intermediate 2
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
Length
37 nucleotides
Bulged bases
7OII|1|1|A|2062, 7OII|1|1|A|2448, 7OII|1|1|U|2449, 7OII|1|1|U|2609
QA status
Modified nucleotides: 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7OII|1|1|G|2057
7OII|1|1|A|2058
7OII|1|1|A|2059
7OII|1|1|A|2060
7OII|1|1|G|2061
7OII|1|1|A|2062
7OII|1|1|C|2063
7OII|1|1|C|2064
*
7OII|1|1|G|2446
7OII|1|1|G|2447
7OII|1|1|A|2448
7OII|1|1|U|2449
7OII|1|1|A|2450
7OII|1|1|A|2451
7OII|1|1|C|2452
7OII|1|1|A|2453
*
7OII|1|1|U|2500
7OII|1|1|C|2501
7OII|1|1|G|2502
7OII|1|1|2MA|2503
7OII|1|1|PSU|2504
7OII|1|1|G|2505
7OII|1|1|U|2506
7OII|1|1|C|2507
*
7OII|1|1|G|2582
7OII|1|1|G|2583
7OII|1|1|U|2584
7OII|1|1|U|2585
7OII|1|1|U|2586
7OII|1|1|A|2587
7OII|1|1|G|2588
*
7OII|1|1|C|2606
7OII|1|1|G|2607
7OII|1|1|G|2608
7OII|1|1|U|2609
7OII|1|1|C|2610
7OII|1|1|C|2611

Current chains

Chain 1
23S rRNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain D
50S ribosomal protein L3
Chain E
50S ribosomal protein L4
Chain K
50S ribosomal protein L15
Chain L
50S ribosomal protein L16
Chain R
50S ribosomal protein L22
Chain V
50S ribosomal protein L27
Chain a
50S ribosomal protein L32
Chain z
Transfer RNA; tRNA

Coloring options:

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