J5_7OII_008

3D structure

PDB id

7OII (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7OII_008 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.063

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7OII|1|2|C|36
7OII|1|2|U|37
7OII|1|2|G|38
7OII|1|2|G|39
*
7OII|1|2|C|403
7OII|1|2|G|404
7OII|1|2|U|405
7OII|1|2|G|406
*
7OII|1|2|C|436
7OII|1|2|U|437
7OII|1|2|U|438
7OII|1|2|U|439
7OII|1|2|C|440
7OII|1|2|A|441
7OII|1|2|G|442
*
7OII|1|2|C|492
7OII|1|2|A|493
7OII|1|2|G|494
7OII|1|2|A|495
7OII|1|2|A|496
7OII|1|2|G|497
7OII|1|2|A|498
7OII|1|2|A|499
7OII|1|2|G|500
*
7OII|1|2|C|545
7OII|1|2|A|546
7OII|1|2|A|547
7OII|1|2|G|548

Current chains

Chain 2

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S4

Chain p

30S ribosomal protein S12