J5_7OII_010
3D structure
- PDB id
- 7OII (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CspA-70 cotranslational folding intermediate 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- G(5MU)GG*CAC*GCG*(5MU)G(5MU)G*CC
- Length
- 16 nucleotides
- Bulged bases
- 7OII|1|z|5MU|8, 7OII|1|z|G|9, 7OII|1|z|5MU|57
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7OII_010 not in the Motif Atlas
- Homologous match to J5_3ZGZ_001
- Geometric discrepancy: 0.2477
- The information below is about J5_3ZGZ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_97113.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7OII|1|z|G|7
7OII|1|z|5MU|8
7OII|1|z|G|9
7OII|1|z|G|10
*
7OII|1|z|C|26
7OII|1|z|A|27
7OII|1|z|C|28
*
7OII|1|z|G|44
7OII|1|z|C|45
7OII|1|z|G|46
*
7OII|1|z|5MU|55
7OII|1|z|G|56
7OII|1|z|5MU|57
7OII|1|z|G|58
*
7OII|1|z|C|74
7OII|1|z|C|75
Current chains
- Chain z
- tRNA-Leu
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- 50S ribosomal protein L16
- Chain q
- 30S ribosomal protein S13
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