J5_7OIZ_004

3D structure

PDB id

7OIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7OIZ|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7OIZ_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0629

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7OIZ|1|a|C|47
7OIZ|1|a|G|48
7OIZ|1|a|A|49
7OIZ|1|a|U|50
7OIZ|1|a|G|51
7OIZ|1|a|A|52
7OIZ|1|a|A|53
7OIZ|1|a|G|54
*
7OIZ|1|a|C|116
7OIZ|1|a|G|117
7OIZ|1|a|A|118
7OIZ|1|a|A|119
7OIZ|1|a|U|120
7OIZ|1|a|G|121
*
7OIZ|1|a|C|130
7OIZ|1|a|A|131
*
7OIZ|1|a|U|148
7OIZ|1|a|A|149
7OIZ|1|a|U|150
*
7OIZ|1|a|A|176
7OIZ|1|a|G|177
7OIZ|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34