J5_7OIZ_008

3D structure

PDB id

7OIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

7OIZ|1|a|A|2448, 7OIZ|1|a|U|2449, 7OIZ|1|a|U|2609

QA status

Modified nucleotides: 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OIZ|1|a|G|2057
7OIZ|1|a|A|2058
7OIZ|1|a|A|2059
7OIZ|1|a|A|2060
7OIZ|1|a|G|2061
7OIZ|1|a|A|2062
7OIZ|1|a|C|2063
7OIZ|1|a|C|2064
*
7OIZ|1|a|G|2446
7OIZ|1|a|G|2447
7OIZ|1|a|A|2448
7OIZ|1|a|U|2449
7OIZ|1|a|A|2450
7OIZ|1|a|A|2451
7OIZ|1|a|C|2452
7OIZ|1|a|A|2453
*
7OIZ|1|a|U|2500
7OIZ|1|a|C|2501
7OIZ|1|a|G|2502
7OIZ|1|a|2MA|2503
7OIZ|1|a|PSU|2504
7OIZ|1|a|G|2505
7OIZ|1|a|U|2506
*
7OIZ|1|a|G|2583
7OIZ|1|a|U|2584
7OIZ|1|a|U|2585
7OIZ|1|a|U|2586
7OIZ|1|a|A|2587
7OIZ|1|a|G|2588
*
7OIZ|1|a|C|2606
7OIZ|1|a|G|2607
7OIZ|1|a|G|2608
7OIZ|1|a|U|2609
7OIZ|1|a|C|2610
7OIZ|1|a|C|2611

Current chains

Chain a

23S rRNA

Nearby chains

Chain 7

TnaC

Chain V

Transfer RNA; tRNA

Chain c

50S ribosomal protein L2

Chain d

50S ribosomal protein L3

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15

Chain l

50S ribosomal protein L16

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32