Loop J5_7OLC

3D structure

PDB id: 7OLC (explore in PDB, NAKB, or RNA 3D Hub)
Description: Thermophilic eukaryotic 80S ribosome at idle POST state
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

Loop

Sequence: AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
Length: 40 nucleotides
Bulged bases: 7OLC|1|1|A|2367, 7OLC|1|1|A|2776, 7OLC|1|1|U|2777, 7OLC|1|1|G|2833, 7OLC|1|1|U|2834, 7OLC|1|1|U|2937, 7OLC|1|1|U|2938
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7OLC|1|1|A|2362
7OLC|1|1|G|2363
7OLC|1|1|A|2364
7OLC|1|1|A|2365
7OLC|1|1|G|2366
7OLC|1|1|A|2367
7OLC|1|1|C|2368
7OLC|1|1|C|2369
*
7OLC|1|1|G|2774
7OLC|1|1|G|2775
7OLC|1|1|A|2776
7OLC|1|1|U|2777
7OLC|1|1|A|2778
7OLC|1|1|A|2779
7OLC|1|1|C|2780
7OLC|1|1|U|2781
7OLC|1|1|G|2782
*
7OLC|1|1|C|2826
7OLC|1|1|U|2827
7OLC|1|1|U|2828
7OLC|1|1|C|2829
7OLC|1|1|G|2830
7OLC|1|1|A|2831
7OLC|1|1|U|2832
7OLC|1|1|G|2833
7OLC|1|1|U|2834
7OLC|1|1|C|2835
*
7OLC|1|1|G|2910
7OLC|1|1|G|2911
7OLC|1|1|U|2912
7OLC|1|1|U|2913
7OLC|1|1|U|2914
7OLC|1|1|A|2915
7OLC|1|1|G|2916
*
7OLC|1|1|U|2934
7OLC|1|1|A|2935
7OLC|1|1|G|2936
7OLC|1|1|U|2937
7OLC|1|1|U|2938
7OLC|1|1|U|2939

Current chains

Chain 1: 26S rRNA

Nearby chains

Chain LA: 60S ribosomal protein L2-like protein
Chain LB: 60S ribosomal protein L3-like protein
Chain LC: 60S ribosomal protein L4-like protein
Chain Lb: 60S ribosomal protein L29

J5_7OLC_005