J5_7OLC_008

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGU*AAAUAC*GAAUGAG*CGAGGAACAAU*AUAG

Length

33 nucleotides

Bulged bases

7OLC|1|2|A|535, 7OLC|1|2|G|537, 7OLC|1|2|A|538, 7OLC|1|2|A|539, 7OLC|1|2|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OLC|1|2|C|31
7OLC|1|2|U|32
7OLC|1|2|U|33
7OLC|1|2|G|34
7OLC|1|2|U|35
*
7OLC|1|2|A|470
7OLC|1|2|A|471
7OLC|1|2|A|472
7OLC|1|2|U|473
7OLC|1|2|A|474
7OLC|1|2|C|475
*
7OLC|1|2|G|507
7OLC|1|2|A|508
7OLC|1|2|A|509
7OLC|1|2|U|510
7OLC|1|2|G|511
7OLC|1|2|A|512
7OLC|1|2|G|513
*
7OLC|1|2|C|533
7OLC|1|2|G|534
7OLC|1|2|A|535
7OLC|1|2|G|536
7OLC|1|2|G|537
7OLC|1|2|A|538
7OLC|1|2|A|539
7OLC|1|2|C|540
7OLC|1|2|A|541
7OLC|1|2|A|542
7OLC|1|2|U|543
*
7OLC|1|2|A|589
7OLC|1|2|U|590
7OLC|1|2|A|591
7OLC|1|2|G|592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein s9-like protein

Chain SX

40S ribosomal protein s23-like protein

Chain Se

40S ribosomal protein S30