J5_7OLC_009

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUG*CGAAUGGC*GAA*UACAU*AAGGCAG

Length

27 nucleotides

Bulged bases

7OLC|1|2|A|92, 7OLC|1|2|C|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OLC|1|2|C|54
7OLC|1|2|A|55
7OLC|1|2|U|56
7OLC|1|2|G|57
*
7OLC|1|2|C|89
7OLC|1|2|G|90
7OLC|1|2|A|91
7OLC|1|2|A|92
7OLC|1|2|U|93
7OLC|1|2|G|94
7OLC|1|2|G|95
7OLC|1|2|C|96
*
7OLC|1|2|G|383
7OLC|1|2|A|384
7OLC|1|2|A|385
*
7OLC|1|2|U|406
7OLC|1|2|A|407
7OLC|1|2|C|408
7OLC|1|2|A|409
7OLC|1|2|U|410
*
7OLC|1|2|A|417
7OLC|1|2|A|418
7OLC|1|2|G|419
7OLC|1|2|G|420
7OLC|1|2|C|421
7OLC|1|2|A|422
7OLC|1|2|G|423

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LV

60S ribosomal protein l23-like protein

Chain SE

40S ribosomal protein S4

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8

Chain SY

40S ribosomal protein S24