J5_7OLC_010

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACCUUG*UUUCCU*ACUUU*AUAGAAUAGGAC*GUAAUGAU

Length

37 nucleotides

Bulged bases

7OLC|1|2|C|635, 7OLC|1|2|U|636, 7OLC|1|2|U|689, 7OLC|1|2|C|691, 7OLC|1|2|C|692, 7OLC|1|2|U|811, 7OLC|1|2|G|813, 7OLC|1|2|A|854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OLC|1|2|A|633
7OLC|1|2|C|634
7OLC|1|2|C|635
7OLC|1|2|U|636
7OLC|1|2|U|637
7OLC|1|2|G|638
*
7OLC|1|2|U|688
7OLC|1|2|U|689
7OLC|1|2|U|690
7OLC|1|2|C|691
7OLC|1|2|C|692
7OLC|1|2|U|693
*
7OLC|1|2|A|739
7OLC|1|2|C|740
7OLC|1|2|U|741
7OLC|1|2|U|742
7OLC|1|2|U|743
*
7OLC|1|2|A|805
7OLC|1|2|U|806
7OLC|1|2|A|807
7OLC|1|2|G|808
7OLC|1|2|A|809
7OLC|1|2|A|810
7OLC|1|2|U|811
7OLC|1|2|A|812
7OLC|1|2|G|813
7OLC|1|2|G|814
7OLC|1|2|A|815
7OLC|1|2|C|816
*
7OLC|1|2|G|851
7OLC|1|2|U|852
7OLC|1|2|A|853
7OLC|1|2|A|854
7OLC|1|2|U|855
7OLC|1|2|G|856
7OLC|1|2|A|857
7OLC|1|2|U|858

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LR

Ribosomal protein L19

Chain SE

40S ribosomal protein S4

Chain SH

40S ribosomal protein S7

Chain SL

40S ribosomal protein S11-like protein

Chain SN

40S ribosomal protein S13-like protein

Chain SW

40S ribosomal protein S22-like protein