J5_7OLC_011
3D structure
- PDB id
- 7OLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at idle POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 7OLC|1|1|G|2381, 7OLC|1|1|A|2758, 7OLC|1|1|G|2759, 7OLC|1|1|A|2760, 7OLC|1|1|A|2761
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7OLC_011 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.2506
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
7OLC|1|1|U|2379
7OLC|1|1|U|2380
7OLC|1|1|G|2381
7OLC|1|1|A|2382
*
7OLC|1|1|U|2570
7OLC|1|1|U|2571
7OLC|1|1|U|2572
7OLC|1|1|G|2573
*
7OLC|1|1|C|2586
7OLC|1|1|A|2587
*
7OLC|1|1|U|2609
7OLC|1|1|G|2610
*
7OLC|1|1|C|2757
7OLC|1|1|A|2758
7OLC|1|1|G|2759
7OLC|1|1|A|2760
7OLC|1|1|A|2761
7OLC|1|1|A|2762
7OLC|1|1|A|2763
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain C
- Ribosome-associated molecular chaperone SSB1
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LN
- Ribosomal protein L15
- Chain LQ
- Ribosomal protein L18-like protein
- Chain LT
- 60S ribosomal protein l21-like protein
- Chain La
- 60S ribosomal protein L28-like protein
- Chain Lo
- 60S ribosomal protein L44-like protein
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