J5_7OLD_001
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UAGG*CGAUGAAG*UGAACG*CG*CAUG
- Length
- 24 nucleotides
- Bulged bases
- 7OLD|1|4|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OLD|1|1|U|20
7OLD|1|1|A|21
7OLD|1|1|G|22
7OLD|1|1|G|23
*
7OLD|1|4|C|35
7OLD|1|4|G|36
7OLD|1|4|A|37
7OLD|1|4|U|38
7OLD|1|4|G|39
7OLD|1|4|A|40
7OLD|1|4|A|41
7OLD|1|4|G|42
*
7OLD|1|4|U|102
7OLD|1|4|G|103
7OLD|1|4|A|104
7OLD|1|4|A|105
7OLD|1|4|C|106
7OLD|1|4|G|107
*
7OLD|1|4|C|115
7OLD|1|4|G|116
*
7OLD|1|4|C|137
7OLD|1|4|A|138
7OLD|1|4|U|139
7OLD|1|4|G|140
Current chains
- Chain 1
- 26S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain LN
- Ribosomal protein L15
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain Lh
- Dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- Ribosomal protein eL39
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