J5_7OLD_002
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUAC*GCCGU*AGUGCAGAUC
- Length
- 30 nucleotides
- Bulged bases
- 7OLD|1|1|G|1412, 7OLD|1|1|U|1419
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OLD|1|1|G|646
7OLD|1|1|G|647
7OLD|1|1|A|648
7OLD|1|1|G|649
7OLD|1|1|U|650
7OLD|1|1|C|651
*
7OLD|1|1|G|781
7OLD|1|1|G|782
7OLD|1|1|A|783
7OLD|1|1|C|784
*
7OLD|1|1|G|923
7OLD|1|1|U|924
7OLD|1|1|U|925
7OLD|1|1|A|926
7OLD|1|1|C|927
*
7OLD|1|1|G|1357
7OLD|1|1|C|1358
7OLD|1|1|C|1359
7OLD|1|1|G|1360
7OLD|1|1|U|1361
*
7OLD|1|1|A|1411
7OLD|1|1|G|1412
7OLD|1|1|U|1413
7OLD|1|1|G|1414
7OLD|1|1|C|1415
7OLD|1|1|A|1416
7OLD|1|1|G|1417
7OLD|1|1|A|1418
7OLD|1|1|U|1419
7OLD|1|1|C|1420
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain LQ
- Ribosomal protein L18-like protein
- Chain La
- 60S ribosomal protein L28-like protein
- Chain Le
- 60S ribosomal protein L32-like protein
- Chain Lq
- Putative 60S ribosomal protein
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