J5_7OLD_003
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAGGAG
- Length
- 27 nucleotides
- Bulged bases
- 7OLD|1|1|U|707, 7OLD|1|1|G|767
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7OLD_003 not in the Motif Atlas
- Homologous match to J5_8C3A_003
- Geometric discrepancy: 0.1367
- The information below is about J5_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OLD|1|1|C|663
7OLD|1|1|G|664
7OLD|1|1|A|665
7OLD|1|1|G|666
*
7OLD|1|1|C|690
7OLD|1|1|G|691
7OLD|1|1|U|692
7OLD|1|1|A|693
7OLD|1|1|A|694
*
7OLD|1|1|U|701
7OLD|1|1|G|702
7OLD|1|1|A|703
7OLD|1|1|A|704
7OLD|1|1|C|705
7OLD|1|1|G|706
7OLD|1|1|U|707
7OLD|1|1|A|708
7OLD|1|1|G|709
*
7OLD|1|1|C|731
7OLD|1|1|G|732
7OLD|1|1|A|733
*
7OLD|1|1|U|764
7OLD|1|1|A|765
7OLD|1|1|G|766
7OLD|1|1|G|767
7OLD|1|1|A|768
7OLD|1|1|G|769
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LL
- 60S ribosomal protein L13
- Chain LQ
- Ribosomal protein L18-like protein
- Chain La
- 60S ribosomal protein L28-like protein
- Chain Lb
- 60S ribosomal protein L29
- Chain Li
- 60S ribosomal protein L36
Coloring options: