J5_7OLD_004
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAGGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7OLD|1|1|G|2079, 7OLD|1|1|G|2084
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7OLD_004 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.115
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
7OLD|1|1|G|1886
7OLD|1|1|C|1887
7OLD|1|1|A|1888
7OLD|1|1|A|1889
7OLD|1|1|A|1890
7OLD|1|1|A|1891
7OLD|1|1|U|1892
7OLD|1|1|A|1893
7OLD|1|1|G|1894
*
7OLD|1|1|U|1918
7OLD|1|1|G|1919
*
7OLD|1|1|U|2072
7OLD|1|1|G|2073
*
7OLD|1|1|C|2077
7OLD|1|1|G|2078
7OLD|1|1|G|2079
7OLD|1|1|A|2080
7OLD|1|1|C|2081
7OLD|1|1|A|2082
7OLD|1|1|G|2083
7OLD|1|1|G|2084
7OLD|1|1|G|2085
*
7OLD|1|1|C|2294
7OLD|1|1|A|2295
7OLD|1|1|C|2296
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LR
- Ribosomal protein L19
- Chain LV
- 60S ribosomal protein l23-like protein
- Chain LW
- 60S ribosomal protein L24-like protein
Coloring options: