Loop J5_7OLD

3D structure

PDB id: 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
Description: Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å

Loop

Sequence: AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
Length: 40 nucleotides
Bulged bases: 7OLD|1|1|A|2367, 7OLD|1|1|A|2776, 7OLD|1|1|G|2833, 7OLD|1|1|U|2834, 7OLD|1|1|U|2937, 7OLD|1|1|U|2938
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7OLD|1|1|A|2362
7OLD|1|1|G|2363
7OLD|1|1|A|2364
7OLD|1|1|A|2365
7OLD|1|1|G|2366
7OLD|1|1|A|2367
7OLD|1|1|C|2368
7OLD|1|1|C|2369
*
7OLD|1|1|G|2774
7OLD|1|1|G|2775
7OLD|1|1|A|2776
7OLD|1|1|U|2777
7OLD|1|1|A|2778
7OLD|1|1|A|2779
7OLD|1|1|C|2780
7OLD|1|1|U|2781
7OLD|1|1|G|2782
*
7OLD|1|1|C|2826
7OLD|1|1|U|2827
7OLD|1|1|U|2828
7OLD|1|1|C|2829
7OLD|1|1|G|2830
7OLD|1|1|A|2831
7OLD|1|1|U|2832
7OLD|1|1|G|2833
7OLD|1|1|U|2834
7OLD|1|1|C|2835
*
7OLD|1|1|G|2910
7OLD|1|1|G|2911
7OLD|1|1|U|2912
7OLD|1|1|U|2913
7OLD|1|1|U|2914
7OLD|1|1|A|2915
7OLD|1|1|G|2916
*
7OLD|1|1|U|2934
7OLD|1|1|A|2935
7OLD|1|1|G|2936
7OLD|1|1|U|2937
7OLD|1|1|U|2938
7OLD|1|1|U|2939

Current chains

Chain 1: 26S rRNA

Nearby chains

Chain LA: 60S ribosomal protein L2-like protein
Chain LB: 60S ribosomal protein L3-like protein
Chain LC: 60S ribosomal protein L4-like protein
Chain Lb: 60S ribosomal protein L29

J5_7OLD_005