J5_7OLD_007

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUGU*AAAUAC*GAAUGAG*CGAGGAACAAU*AUAG

Length

33 nucleotides

Bulged bases

7OLD|1|2|A|535, 7OLD|1|2|A|538, 7OLD|1|2|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OLD|1|2|C|31
7OLD|1|2|U|32
7OLD|1|2|U|33
7OLD|1|2|G|34
7OLD|1|2|U|35
*
7OLD|1|2|A|470
7OLD|1|2|A|471
7OLD|1|2|A|472
7OLD|1|2|U|473
7OLD|1|2|A|474
7OLD|1|2|C|475
*
7OLD|1|2|G|507
7OLD|1|2|A|508
7OLD|1|2|A|509
7OLD|1|2|U|510
7OLD|1|2|G|511
7OLD|1|2|A|512
7OLD|1|2|G|513
*
7OLD|1|2|C|533
7OLD|1|2|G|534
7OLD|1|2|A|535
7OLD|1|2|G|536
7OLD|1|2|G|537
7OLD|1|2|A|538
7OLD|1|2|A|539
7OLD|1|2|C|540
7OLD|1|2|A|541
7OLD|1|2|A|542
7OLD|1|2|U|543
*
7OLD|1|2|A|589
7OLD|1|2|U|590
7OLD|1|2|A|591
7OLD|1|2|G|592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein s9-like protein

Chain SX

40S ribosomal protein s23-like protein

Chain Se

40S ribosomal protein S30