J5_7OLD_008

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUG*CGAAUGGC*GAA*UACAU*AAGGCAG

Length

27 nucleotides

Bulged bases

7OLD|1|2|A|92, 7OLD|1|2|C|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OLD|1|2|C|54
7OLD|1|2|A|55
7OLD|1|2|U|56
7OLD|1|2|G|57
*
7OLD|1|2|C|89
7OLD|1|2|G|90
7OLD|1|2|A|91
7OLD|1|2|A|92
7OLD|1|2|U|93
7OLD|1|2|G|94
7OLD|1|2|G|95
7OLD|1|2|C|96
*
7OLD|1|2|G|383
7OLD|1|2|A|384
7OLD|1|2|A|385
*
7OLD|1|2|U|406
7OLD|1|2|A|407
7OLD|1|2|C|408
7OLD|1|2|A|409
7OLD|1|2|U|410
*
7OLD|1|2|A|417
7OLD|1|2|A|418
7OLD|1|2|G|419
7OLD|1|2|G|420
7OLD|1|2|C|421
7OLD|1|2|A|422
7OLD|1|2|G|423

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LV

60S ribosomal protein l23-like protein

Chain SE

40S ribosomal protein S4

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8

Chain SY

40S ribosomal protein S24