J5_7OLD_009

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACCUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

7OLD|1|2|C|635, 7OLD|1|2|U|636, 7OLD|1|2|U|689, 7OLD|1|2|C|691, 7OLD|1|2|C|692, 7OLD|1|2|U|741, 7OLD|1|2|U|811, 7OLD|1|2|G|813, 7OLD|1|2|A|854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OLD|1|2|A|633
7OLD|1|2|C|634
7OLD|1|2|C|635
7OLD|1|2|U|636
7OLD|1|2|U|637
7OLD|1|2|G|638
*
7OLD|1|2|U|688
7OLD|1|2|U|689
7OLD|1|2|U|690
7OLD|1|2|C|691
7OLD|1|2|C|692
7OLD|1|2|U|693
*
7OLD|1|2|A|739
7OLD|1|2|C|740
7OLD|1|2|U|741
7OLD|1|2|U|742
7OLD|1|2|U|743
*
7OLD|1|2|A|805
7OLD|1|2|U|806
7OLD|1|2|A|807
7OLD|1|2|G|808
7OLD|1|2|A|809
7OLD|1|2|A|810
7OLD|1|2|U|811
7OLD|1|2|A|812
7OLD|1|2|G|813
7OLD|1|2|G|814
7OLD|1|2|A|815
*
7OLD|1|2|U|852
7OLD|1|2|A|853
7OLD|1|2|A|854
7OLD|1|2|U|855
7OLD|1|2|G|856
7OLD|1|2|A|857
7OLD|1|2|U|858

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LR

Ribosomal protein L19

Chain SE

40S ribosomal protein S4

Chain SH

40S ribosomal protein S7

Chain SL

40S ribosomal protein S11-like protein

Chain SN

40S ribosomal protein S13-like protein

Chain SW

40S ribosomal protein S22-like protein