J5_7OLD_010
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 7OLD|1|4|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7OLD_010 not in the Motif Atlas
- Homologous match to J5_8CRE_001
- Geometric discrepancy: 0.0913
- The information below is about J5_8CRE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7OLD|1|1|A|21
7OLD|1|1|G|22
7OLD|1|1|G|23
*
7OLD|1|4|C|35
7OLD|1|4|G|36
7OLD|1|4|A|37
7OLD|1|4|U|38
7OLD|1|4|G|39
7OLD|1|4|A|40
7OLD|1|4|A|41
7OLD|1|4|G|42
*
7OLD|1|4|U|102
7OLD|1|4|G|103
7OLD|1|4|A|104
7OLD|1|4|A|105
7OLD|1|4|C|106
7OLD|1|4|G|107
*
7OLD|1|4|C|115
7OLD|1|4|G|116
*
7OLD|1|4|C|137
7OLD|1|4|A|138
7OLD|1|4|U|139
Current chains
- Chain 1
- 26S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain LN
- Ribosomal protein L15
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain Lh
- Dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- Ribosomal protein eL39
Coloring options: