J5_7OPE_001

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

7OPE|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7OPE_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0967

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7OPE|1|A|C|47
7OPE|1|A|G|48
7OPE|1|A|A|49
7OPE|1|A|U|50
7OPE|1|A|G|51
7OPE|1|A|A|52
7OPE|1|A|A|53
7OPE|1|A|G|54
*
7OPE|1|A|C|115
7OPE|1|A|G|116
7OPE|1|A|A|117
7OPE|1|A|A|118
7OPE|1|A|U|119
7OPE|1|A|G|120
*
7OPE|1|A|C|129
7OPE|1|A|A|130
*
7OPE|1|A|U|149
7OPE|1|A|A|150
7OPE|1|A|U|151
*
7OPE|1|A|A|178
7OPE|1|A|A|179
7OPE|1|A|G|180

Current chains

Chain A

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L34