J5_7OPE_002

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAAC*GGGUUGUA*UGAGUAC*GGAAUCCG*CAAG

Length

33 nucleotides

Bulged bases

7OPE|1|A|U|301, 7OPE|1|A|C|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OPE|1|A|C|271
7OPE|1|A|C|272
7OPE|1|A|A|273
7OPE|1|A|A|274
7OPE|1|A|A|275
7OPE|1|A|C|276
*
7OPE|1|A|G|295
7OPE|1|A|G|296
7OPE|1|A|G|297
7OPE|1|A|U|298
7OPE|1|A|U|299
7OPE|1|A|G|300
7OPE|1|A|U|301
7OPE|1|A|A|302
*
7OPE|1|A|U|416
7OPE|1|A|G|417
7OPE|1|A|A|418
7OPE|1|A|G|419
7OPE|1|A|U|420
7OPE|1|A|A|421
7OPE|1|A|C|422
*
7OPE|1|A|G|446
7OPE|1|A|G|447
7OPE|1|A|A|448
7OPE|1|A|A|449
7OPE|1|A|U|450
7OPE|1|A|C|451
7OPE|1|A|C|452
7OPE|1|A|G|453
*
7OPE|1|A|C|468
7OPE|1|A|A|469
7OPE|1|A|A|470
7OPE|1|A|G|471

Current chains

Chain A

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L28