J5_7OT5_005
3D structure
- PDB id
- 7OT5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CspA-70 cotranslational folding intermediate 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 7OT5|1|1|A|2062, 7OT5|1|1|A|2448, 7OT5|1|1|U|2609
- QA status
- Modified nucleotides: 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OT5|1|1|G|2057
7OT5|1|1|A|2058
7OT5|1|1|A|2059
7OT5|1|1|A|2060
7OT5|1|1|G|2061
7OT5|1|1|A|2062
7OT5|1|1|C|2063
7OT5|1|1|C|2064
*
7OT5|1|1|G|2446
7OT5|1|1|G|2447
7OT5|1|1|A|2448
7OT5|1|1|U|2449
7OT5|1|1|A|2450
7OT5|1|1|A|2451
7OT5|1|1|C|2452
7OT5|1|1|A|2453
*
7OT5|1|1|U|2500
7OT5|1|1|C|2501
7OT5|1|1|G|2502
7OT5|1|1|2MA|2503
7OT5|1|1|PSU|2504
7OT5|1|1|G|2505
7OT5|1|1|U|2506
7OT5|1|1|C|2507
*
7OT5|1|1|G|2582
7OT5|1|1|G|2583
7OT5|1|1|U|2584
7OT5|1|1|U|2585
7OT5|1|1|U|2586
7OT5|1|1|A|2587
7OT5|1|1|G|2588
*
7OT5|1|1|C|2606
7OT5|1|1|G|2607
7OT5|1|1|G|2608
7OT5|1|1|U|2609
7OT5|1|1|C|2610
7OT5|1|1|C|2611
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain B
- Cold shock protein CspB
- Chain C
- 50S ribosomal protein L2
- Chain D
- 50S ribosomal protein L3
- Chain E
- 50S ribosomal protein L4
- Chain K
- 50S ribosomal protein L15
- Chain L
- 50S ribosomal protein L16
- Chain R
- 50S ribosomal protein L22
- Chain a
- 50S ribosomal protein L32
- Chain z
- Transfer RNA; tRNA
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