J5_7OT5_008

3D structure

PDB id

7OT5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7OT5_008 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0612

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7OT5|1|2|C|36
7OT5|1|2|U|37
7OT5|1|2|G|38
7OT5|1|2|G|39
*
7OT5|1|2|C|403
7OT5|1|2|G|404
7OT5|1|2|U|405
7OT5|1|2|G|406
*
7OT5|1|2|C|436
7OT5|1|2|U|437
7OT5|1|2|U|438
7OT5|1|2|U|439
7OT5|1|2|C|440
7OT5|1|2|A|441
7OT5|1|2|G|442
*
7OT5|1|2|C|492
7OT5|1|2|A|493
7OT5|1|2|G|494
7OT5|1|2|A|495
7OT5|1|2|A|496
7OT5|1|2|G|497
7OT5|1|2|A|498
7OT5|1|2|A|499
7OT5|1|2|G|500
*
7OT5|1|2|C|545
7OT5|1|2|A|546
7OT5|1|2|A|547
7OT5|1|2|G|548

Current chains

Chain 2

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S4

Chain p

30S ribosomal protein S12