J5_7OTC_001

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7OTC|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7OTC_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0549

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7OTC|1|A|C|47
7OTC|1|A|G|48
7OTC|1|A|A|49
7OTC|1|A|U|50
7OTC|1|A|G|51
7OTC|1|A|A|52
7OTC|1|A|A|53
7OTC|1|A|G|54
*
7OTC|1|A|C|116
7OTC|1|A|G|117
7OTC|1|A|A|118
7OTC|1|A|A|119
7OTC|1|A|U|120
7OTC|1|A|G|121
*
7OTC|1|A|C|130
7OTC|1|A|A|131
*
7OTC|1|A|U|148
7OTC|1|A|A|149
7OTC|1|A|U|150
*
7OTC|1|A|A|176
7OTC|1|A|G|177
7OTC|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34