J5_7OTC_005
3D structure
- PDB id
- 7OTC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 7OTC|1|A|A|2062, 7OTC|1|A|A|2448, 7OTC|1|A|U|2609
- QA status
- Modified nucleotides: H2U, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OTC|1|A|G|2057
7OTC|1|A|A|2058
7OTC|1|A|A|2059
7OTC|1|A|A|2060
7OTC|1|A|G|2061
7OTC|1|A|A|2062
7OTC|1|A|C|2063
7OTC|1|A|C|2064
*
7OTC|1|A|G|2446
7OTC|1|A|G|2447
7OTC|1|A|A|2448
7OTC|1|A|H2U|2449
7OTC|1|A|A|2450
7OTC|1|A|A|2451
7OTC|1|A|C|2452
7OTC|1|A|A|2453
*
7OTC|1|A|U|2500
7OTC|1|A|C|2501
7OTC|1|A|G|2502
7OTC|1|A|2MA|2503
7OTC|1|A|PSU|2504
7OTC|1|A|G|2505
7OTC|1|A|U|2506
7OTC|1|A|C|2507
*
7OTC|1|A|G|2582
7OTC|1|A|G|2583
7OTC|1|A|U|2584
7OTC|1|A|U|2585
7OTC|1|A|U|2586
7OTC|1|A|A|2587
7OTC|1|A|G|2588
*
7OTC|1|A|C|2606
7OTC|1|A|G|2607
7OTC|1|A|G|2608
7OTC|1|A|U|2609
7OTC|1|A|C|2610
7OTC|1|A|C|2611
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain C
- 50S ribosomal protein L2
- Chain D
- 50S ribosomal protein L3
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain S
- 50S ribosomal protein L22
- Chain W
- 50S ribosomal protein L27
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