J5_7P7Q_009
3D structure
- PDB id
- 7P7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7P7Q|1|a|A|125, 7P7Q|1|a|C|378
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7P7Q_009 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.093
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7P7Q|1|a|C|60
7P7Q|1|a|A|61
7P7Q|1|a|A|62
7P7Q|1|a|G|63
*
7P7Q|1|a|C|122
7P7Q|1|a|G|123
7P7Q|1|a|G|124
7P7Q|1|a|A|125
7P7Q|1|a|C|126
7P7Q|1|a|G|127
7P7Q|1|a|G|128
7P7Q|1|a|G|129
*
7P7Q|1|a|C|340
7P7Q|1|a|A|341
7P7Q|1|a|C|342
*
7P7Q|1|a|G|363
7P7Q|1|a|A|364
7P7Q|1|a|C|365
*
7P7Q|1|a|G|376
7P7Q|1|a|G|377
7P7Q|1|a|C|378
7P7Q|1|a|A|379
7P7Q|1|a|G|380
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain N
- 50S ribosomal protein L14
- Chain q
- 30S ribosomal protein S16
- Chain u
- 30S ribosomal protein S20
Coloring options: