3D structure

PDB id
7PJS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.35 Å

Loop

Sequence
GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
Length
37 nucleotides
Bulged bases
7PJS|1|A|A|2448, 7PJS|1|A|U|2449, 7PJS|1|A|U|2609
QA status
Modified nucleotides: 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7PJS|1|A|G|2057
7PJS|1|A|A|2058
7PJS|1|A|A|2059
7PJS|1|A|A|2060
7PJS|1|A|G|2061
7PJS|1|A|A|2062
7PJS|1|A|C|2063
7PJS|1|A|C|2064
*
7PJS|1|A|G|2446
7PJS|1|A|G|2447
7PJS|1|A|A|2448
7PJS|1|A|U|2449
7PJS|1|A|A|2450
7PJS|1|A|A|2451
7PJS|1|A|C|2452
7PJS|1|A|A|2453
*
7PJS|1|A|U|2500
7PJS|1|A|C|2501
7PJS|1|A|G|2502
7PJS|1|A|2MA|2503
7PJS|1|A|PSU|2504
7PJS|1|A|G|2505
7PJS|1|A|U|2506
7PJS|1|A|C|2507
*
7PJS|1|A|G|2582
7PJS|1|A|G|2583
7PJS|1|A|U|2584
7PJS|1|A|U|2585
7PJS|1|A|U|2586
7PJS|1|A|A|2587
7PJS|1|A|G|2588
*
7PJS|1|A|C|2606
7PJS|1|A|G|2607
7PJS|1|A|G|2608
7PJS|1|A|U|2609
7PJS|1|A|C|2610
7PJS|1|A|C|2611

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain C
50S ribosomal protein L2
Chain D
50S ribosomal protein L3
Chain E
50S ribosomal protein L4
Chain L
50S ribosomal protein L15
Chain M
50S ribosomal protein L16
Chain S
50S ribosomal protein L22

Coloring options:

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