J5_7PJS_008

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7PJS_008 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0503

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7PJS|1|a|C|36
7PJS|1|a|U|37
7PJS|1|a|G|38
7PJS|1|a|G|39
*
7PJS|1|a|C|403
7PJS|1|a|G|404
7PJS|1|a|U|405
7PJS|1|a|G|406
*
7PJS|1|a|C|436
7PJS|1|a|U|437
7PJS|1|a|U|438
7PJS|1|a|U|439
7PJS|1|a|C|440
7PJS|1|a|A|441
7PJS|1|a|G|442
*
7PJS|1|a|C|492
7PJS|1|a|A|493
7PJS|1|a|G|494
7PJS|1|a|A|495
7PJS|1|a|A|496
7PJS|1|a|G|497
7PJS|1|a|A|498
7PJS|1|a|A|499
7PJS|1|a|G|500
*
7PJS|1|a|C|545
7PJS|1|a|A|546
7PJS|1|a|A|547
7PJS|1|a|G|548

Current chains

Chain a

16S ribosomal RNA

Nearby chains