J5_7PJX_001

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7PJX|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7PJX_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.072

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7PJX|1|A|C|47
7PJX|1|A|G|48
7PJX|1|A|A|49
7PJX|1|A|U|50
7PJX|1|A|G|51
7PJX|1|A|A|52
7PJX|1|A|A|53
7PJX|1|A|G|54
*
7PJX|1|A|C|116
7PJX|1|A|G|117
7PJX|1|A|A|118
7PJX|1|A|A|119
7PJX|1|A|U|120
7PJX|1|A|G|121
*
7PJX|1|A|C|130
7PJX|1|A|A|131
*
7PJX|1|A|U|148
7PJX|1|A|A|149
7PJX|1|A|U|150
*
7PJX|1|A|A|176
7PJX|1|A|G|177
7PJX|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34