3D structure

PDB id
7PJY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
7PJY|1|a|A|60, 7PJY|1|a|A|109, 7PJY|1|a|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7PJY_008 not in the Motif Atlas
Homologous match to J5_5J7L_003
Geometric discrepancy: 0.0886
The information below is about J5_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

7PJY|1|a|C|58
7PJY|1|a|A|59
7PJY|1|a|A|60
7PJY|1|a|G|61
*
7PJY|1|a|C|106
7PJY|1|a|G|107
7PJY|1|a|G|108
7PJY|1|a|A|109
7PJY|1|a|C|110
7PJY|1|a|G|111
7PJY|1|a|G|112
7PJY|1|a|G|113
*
7PJY|1|a|C|314
7PJY|1|a|A|315
7PJY|1|a|C|316
*
7PJY|1|a|G|337
7PJY|1|a|A|338
7PJY|1|a|C|339
*
7PJY|1|a|G|350
7PJY|1|a|G|351
7PJY|1|a|C|352
7PJY|1|a|A|353
7PJY|1|a|G|354

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain K
50S ribosomal protein L14
Chain P
50S ribosomal protein L19
Chain p
30S ribosomal protein S16
Chain t
30S ribosomal protein S20

Coloring options:


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