J5_7PWG_002
3D structure
- PDB id
- 7PWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- GGAGCC*GGGC*GUUG*CC*GCA(OMG)AUC
- Length
- 23 nucleotides
- Bulged bases
- 7PWG|1|1|U|1123
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7PWG_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.1198
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7PWG|1|1|G|405
7PWG|1|1|G|406
7PWG|1|1|A|407
7PWG|1|1|G|408
7PWG|1|1|C|409
7PWG|1|1|C|410
*
7PWG|1|1|G|515
7PWG|1|1|G|516
7PWG|1|1|G|517
7PWG|1|1|C|518
*
7PWG|1|1|G|657
7PWG|1|1|U|658
7PWG|1|1|U|659
7PWG|1|1|G|660
*
7PWG|1|1|C|1061
7PWG|1|1|C|1062
*
7PWG|1|1|G|1118
7PWG|1|1|C|1119
7PWG|1|1|A|1120
7PWG|1|1|OMG|1121
7PWG|1|1|A|1122
7PWG|1|1|U|1123
7PWG|1|1|C|1124
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain 4
- rRNA 5.8S
- Chain C
- Ribosomal protein L4
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain a
- Ribosomal protein L27a
- Chain e
- Ribosomal protein L32
Coloring options: