J5_7PWG_004
3D structure
- PDB id
- 7PWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACGCGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7PWG|1|1|G|1604, 7PWG|1|1|G|1609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7PWG_004 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.094
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
7PWG|1|1|G|1537
7PWG|1|1|C|1538
7PWG|1|1|A|1539
7PWG|1|1|A|1540
7PWG|1|1|G|1541
7PWG|1|1|C|1542
7PWG|1|1|C|1543
7PWG|1|1|G|1544
7PWG|1|1|G|1545
*
7PWG|1|1|U|1569
7PWG|1|1|G|1570
*
7PWG|1|1|U|1597
7PWG|1|1|G|1598
*
7PWG|1|1|C|1602
7PWG|1|1|G|1603
7PWG|1|1|G|1604
7PWG|1|1|A|1605
7PWG|1|1|C|1606
7PWG|1|1|G|1607
7PWG|1|1|C|1608
7PWG|1|1|G|1609
7PWG|1|1|G|1610
*
7PWG|1|1|C|1818
7PWG|1|1|A|1819
7PWG|1|1|C|1820
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain R
- Ribosomal protein L19
- Chain V
- Ribosomal protein L23
- Chain W
- Ribosomal protein L24A
Coloring options: