Loop J5_7PWG

3D structure

PDB id: 7PWG (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.75 Å

Loop

Sequence: AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GGUUUAG*UAGUUU
Length: 40 nucleotides
Bulged bases: 7PWG|1|1|A|1891, 7PWG|1|1|A|2239, 7PWG|1|1|U|2240, 7PWG|1|1|U|2295, 7PWG|1|1|G|2296, 7PWG|1|1|U|2399, 7PWG|1|1|U|2400
QA status: Modified nucleotides: OMG, 5MC

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7PWG|1|1|A|1886
7PWG|1|1|G|1887
7PWG|1|1|A|1888
7PWG|1|1|A|1889
7PWG|1|1|G|1890
7PWG|1|1|A|1891
7PWG|1|1|C|1892
7PWG|1|1|C|1893
*
7PWG|1|1|OMG|2237
7PWG|1|1|G|2238
7PWG|1|1|A|2239
7PWG|1|1|U|2240
7PWG|1|1|A|2241
7PWG|1|1|A|2242
7PWG|1|1|C|2243
7PWG|1|1|U|2244
7PWG|1|1|G|2245
*
7PWG|1|1|C|2289
7PWG|1|1|U|2290
7PWG|1|1|U|2291
7PWG|1|1|5MC|2292
7PWG|1|1|G|2293
7PWG|1|1|A|2294
7PWG|1|1|U|2295
7PWG|1|1|G|2296
7PWG|1|1|U|2297
7PWG|1|1|C|2298
*
7PWG|1|1|G|2372
7PWG|1|1|G|2373
7PWG|1|1|U|2374
7PWG|1|1|U|2375
7PWG|1|1|U|2376
7PWG|1|1|A|2377
7PWG|1|1|G|2378
*
7PWG|1|1|U|2396
7PWG|1|1|A|2397
7PWG|1|1|G|2398
7PWG|1|1|U|2399
7PWG|1|1|U|2400
7PWG|1|1|U|2401

Current chains

Chain 1: rRNA 28S

Nearby chains

Chain A: Ribosomal protein L2
Chain B: Ribosomal protein L3
Chain C: Ribosomal protein L4
Chain E: P-site tRNA
Chain b: 60S ribosomal protein L29

J5_7PWG_005