J5_7PWG_006
3D structure
- PDB id
- 7PWG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- UUGA*UUCG*CG*C(OMG)*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 7PWG|1|1|G|1905, 7PWG|1|1|A|2221, 7PWG|1|1|G|2222, 7PWG|1|1|A|2223, 7PWG|1|1|A|2224
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7PWG_006 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.286
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
7PWG|1|1|U|1903
7PWG|1|1|U|1904
7PWG|1|1|G|1905
7PWG|1|1|A|1906
*
7PWG|1|1|U|2034
7PWG|1|1|U|2035
7PWG|1|1|C|2036
7PWG|1|1|G|2037
*
7PWG|1|1|C|2050
7PWG|1|1|G|2051
*
7PWG|1|1|C|2073
7PWG|1|1|OMG|2074
*
7PWG|1|1|C|2220
7PWG|1|1|A|2221
7PWG|1|1|G|2222
7PWG|1|1|A|2223
7PWG|1|1|A|2224
7PWG|1|1|A|2225
7PWG|1|1|A|2226
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain A
- Ribosomal protein L2
- Chain N
- Ribosomal protein L15
- Chain Q
- Ribosomal protein L18
- Chain T
- Ribosomal protein L21
- Chain a
- Ribosomal protein L27a
- Chain b
- 60S ribosomal protein L29
- Chain o
- Ribosomal protein L44
- Chain w
- Transfer RNA; tRNA
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