J5_7PZY_001
3D structure
- PDB id
- 7PZY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the vacant Candida albicans 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.32 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 7PZY|1|4|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7PZY_001 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.0452
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7PZY|1|1|A|19
7PZY|1|1|G|20
7PZY|1|1|G|21
*
7PZY|1|4|C|35
7PZY|1|4|G|36
7PZY|1|4|A|37
7PZY|1|4|U|38
7PZY|1|4|G|39
7PZY|1|4|A|40
7PZY|1|4|A|41
7PZY|1|4|G|42
*
7PZY|1|4|U|102
7PZY|1|4|G|103
7PZY|1|4|A|104
7PZY|1|4|A|105
7PZY|1|4|C|106
7PZY|1|4|G|107
*
7PZY|1|4|C|115
7PZY|1|4|G|116
*
7PZY|1|4|C|137
7PZY|1|4|A|138
7PZY|1|4|U|139
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain 8
- Ribosomal 60S subunit protein L25
- Chain AI
- Ribosomal 60S subunit protein L35A
- Chain AK
- Ribosomal protein L37
- Chain AM
- 60S ribosomal protein L39
- Chain v
- Ribosomal protein L15
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